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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8808-RA through 18771 annotations produced 1 hits



pyruvate dehydrogenase kinase (Pdk):

Annotation Number : CG8808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017558
Gbrowse : chr2R:5313946-5320899 (+) // 100.0 //
Probeset : 1629515_at
Accessions : protein= NP_001097240; /// NP_477215;, nucleotide= NM_001103770; /// NM_057867;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from seq
Interpro : 0000155 // two-component sensor activity // inferred from electronic annotation /// 0000166 // nucleotide binding // inf
FlyMine data for FBgn0017558.
BioGrid reports that CG8808 interacts with CG9238 .
TRiP has 2 RNAi stocks for FBgn0017558 available for purchase.
VDRC has 3 RNAi stocks for FBgn0017558 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain559 ± 174 of 4 1.90Up
Head537 ± 154 of 4 1.90Up
Eye694 ± 144 of 4 2.42Up
Thoracicoabdominal ganglion735 ± 154 of 4 2.60Up
Salivary gland207 ± 254 of 4 0.72Down
Crop615 ± 164 of 4 2.10Up
Midgut284 ± 164 of 4 1.00None
Tubule758 ± 1294 of 4 2.60Up
Hindgut874 ± 244 of 4 3.00Up
Heart1555 ± 824 of 4 5.42Up
Fat body1029 ± 1164 of 4 3.58Up
Ovary243 ± 154 of 4 0.80None
Testis10 ± 22 of 4 0.00Down
Male accessory glands318 ± 144 of 4 1.10None
Virgin spermatheca1571 ± 814 of 4 5.47Up
Mated spermatheca1051 ± 274 of 4 3.66Up
Adult carcass772 ± 844 of 4 2.70Up
Larval CNS175 ± 274 of 4 0.61Down
Larval Salivary gland203 ± 324 of 4 0.71None
Larval midgut521 ± 784 of 4 1.82None
Larval tubule1072 ± 294 of 4 3.70Up
Larval hindgut591 ± 174 of 4 2.06Up
Larval fat body808 ± 524 of 4 2.80Up
Larval trachea313 ± 414 of 4 1.09None
Larval carcass534 ± 254 of 4 1.86Up
S2 cells (growing)113 ± 34 of 4 0.39Down
Whole fly287 ± 174 of 4

Looking for CG8808-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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