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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8811-RB through 18771 annotations produced 1 hits



muskelin (muskelin):

Annotation Number : CG8811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033757
Gbrowse : chr2R:8516471-8519883 (-) // 100.0 //
Probeset : 1639471_s_at
Accessions : protein= NP_610801; /// NP_725200;, nucleotide= NM_136957; /// NM_165928;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0033757.
BDGP gene expression has embryonic in situ data for CG8811: 19 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0033757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 34 of 4 0.10Down
Head31 ± 34 of 4 0.10Down
Eye21 ± 24 of 4 0.06Down
Thoracicoabdominal ganglion30 ± 14 of 4 0.10Down
Salivary gland37 ± 63 of 4 0.11Down
Crop50 ± 24 of 4 0.20Down
Midgut29 ± 34 of 4 0.10Down
Tubule22 ± 33 of 4 0.10Down
Hindgut36 ± 54 of 4 0.10Down
Heart20 ± 43 of 4 0.06Down
Fat body35 ± 43 of 4 0.11Down
Ovary676 ± 154 of 4 2.00Up
Testis37 ± 14 of 4 0.10Down
Male accessory glands23 ± 12 of 4 0.10Down
Virgin spermatheca18 ± 10 of 4 0.06Down
Mated spermatheca15 ± 20 of 4 0.05Down
Adult carcass55 ± 62 of 4 0.20Down
Larval CNS38 ± 64 of 4 0.11Down
Larval Salivary gland47 ± 24 of 4 0.14Down
Larval midgut40 ± 23 of 4 0.12Down
Larval tubule34 ± 44 of 4 0.10Down
Larval hindgut39 ± 34 of 4 0.12Down
Larval fat body54 ± 64 of 4 0.20Down
Larval trachea30 ± 34 of 4 0.09Down
Larval carcass38 ± 14 of 4 0.11Down
S2 cells (growing)43 ± 24 of 4 0.13Down
Whole fly332 ± 334 of 4

Looking for CG8811-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime