FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8814-RA through 18771 annotations produced 1 hits

(CG8814):

Annotation Number : CG8814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031478
Gbrowse : chr2L:2874871-2877154 (+) // 99.5 //
Probeset : 1640698_at
Accessions : protein= NP_608729;, nucleotide= NM_134885;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // inferr
FlyMine data for FBgn0031478.
BDGP gene expression has embryonic in situ data for CG8814: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031478 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	345 ± 6	4 of 4	1.40	Up
Head	297 ± 9	4 of 4	1.20	Up
Eye	169 ± 5	4 of 4	0.68	Down
Thoracicoabdominal ganglion	409 ± 16	4 of 4	1.70	Up
Salivary gland	239 ± 7	4 of 4	0.96	None
Crop	1526 ± 35	4 of 4	6.20	Up
Midgut	420 ± 14	4 of 4	1.70	Up
Tubule	327 ± 14	4 of 4	1.30	Up
Hindgut	667 ± 27	4 of 4	2.70	Up
Heart	642 ± 56	4 of 4	2.59	Up
Fat body	894 ± 125	4 of 4	3.61	Up
Ovary	329 ± 5	4 of 4	1.30	Up
Testis	35 ± 1	4 of 4	0.10	Down
Male accessory glands	134 ± 2	4 of 4	0.50	Down
Virgin spermatheca	387 ± 44	4 of 4	1.56	Up
Mated spermatheca	352 ± 24	4 of 4	1.42	Up
Adult carcass	575 ± 29	4 of 4	2.30	Up
Larval CNS	154 ± 10	4 of 4	0.62	Down
Larval Salivary gland	271 ± 10	4 of 4	1.09	None
Larval midgut	692 ± 16	4 of 4	2.79	Up
Larval tubule	269 ± 8	4 of 4	1.10	None
Larval hindgut	259 ± 10	4 of 4	1.05	None
Larval fat body	331 ± 23	4 of 4	1.30	Up
Larval trachea	269 ± 7	4 of 4	1.08	Up
Larval carcass	289 ± 12	4 of 4	1.17	Up
S2 cells (growing)	181 ± 6	4 of 4	0.73	Down
Whole fly	248 ± 6	4 of 4

Looking for CG8814-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720