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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8815-RD through 18771 annotations produced 1 hits



Enhancer of GMR-sina 2-3 (Sin3A):

Annotation Number : CG8815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022764
Gbrowse : chr2R:8465961-8480397 (-) // 100.0 //
Probeset : 1628903_s_at
Accessions : protein= NP_610799; /// NP_725187; /// NP_725188; /// NP_725189;, nucleotide= NM_136955; /// NM_165915; /// NM_165916; /// NM_165917;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007346 // regulation of mitotic cell cycle // inferred from m
Interpro : DNA-dependent // inferred from mutant phenotype /// 0045892 // negative regulation of transcription
FlyMine data for FBgn0022764.
BioGrid reports that CG8815 interacts with CG9099 CG8882 CG9184 CG9511 CG3166 CG9375 CG9949 .
TRiP has 1 RNAi stocks for FBgn0022764 available for purchase.
VDRC has 2 RNAi stocks for FBgn0022764 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 44 of 4 1.30Up
Head39 14 of 4 0.70Down
Eye14 23 of 4 0.24Down
Thoracicoabdominal ganglion39 44 of 4 0.70Down
Salivary gland44 34 of 4 0.74None
Crop49 34 of 4 0.80None
Midgut19 13 of 4 0.30Down
Tubule9 01 of 4 0.20Down
Hindgut33 14 of 4 0.60Down
Heart13 14 of 4 0.23Down
Fat body25 74 of 4 0.44Down
Ovary130 54 of 4 2.20Up
Testis15 14 of 4 0.30Down
Male accessory glands46 44 of 4 0.80None
Virgin spermatheca6 02 of 4 0.11Down
Mated spermatheca6 02 of 4 0.11Down
Adult carcass36 54 of 4 0.60Down
Larval CNS76 54 of 4 1.29Up
Larval Salivary gland27 64 of 4 0.47Down
Larval midgut12 04 of 4 0.21Down
Larval tubule30 24 of 4 0.50Down
Larval hindgut23 04 of 4 0.39Down
Larval fat body30 24 of 4 0.50Down
Larval trachea21 84 of 4 0.36Down
Larval carcass25 24 of 4 0.43Down
S2 cells (growing)132 124 of 4 2.25Up
Whole fly59 54 of 4

Looking for CG8815-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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