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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8816-RA through 18771 annotations produced 1 hits



CG8816 (Ak6):

Annotation Number : CG8816
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033754
Gbrowse : chr2R:8456514-8457372 (-) // 100.0 //
Probeset : 1635356_at
Accessions : protein= NP_610797;, nucleotide= NM_136953;
Interpro : 0004017 // adenylate kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred fr
FlyMine data for FBgn0033754.
BioGrid reports that CG8816 interacts with CG9954 .
TRiP has 1 RNAi stocks for FBgn0033754 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 14 of 4 0.50Down
Head92 64 of 4 0.60Down
Eye73 44 of 4 0.44Down
Thoracicoabdominal ganglion104 34 of 4 0.60Down
Salivary gland126 94 of 4 0.76Down
Crop128 44 of 4 0.80Down
Midgut81 14 of 4 0.50Down
Tubule82 84 of 4 0.50Down
Hindgut99 24 of 4 0.60Down
Heart72 24 of 4 0.43Down
Fat body90 214 of 4 0.54Down
Ovary247 94 of 4 1.50Up
Testis52 34 of 4 0.30Down
Male accessory glands168 94 of 4 1.00None
Virgin spermatheca96 74 of 4 0.58Down
Mated spermatheca110 24 of 4 0.66Down
Adult carcass66 24 of 4 0.40Down
Larval CNS213 74 of 4 1.28Up
Larval Salivary gland147 64 of 4 0.89None
Larval midgut50 34 of 4 0.30Down
Larval tubule49 24 of 4 0.30Down
Larval hindgut100 144 of 4 0.60Down
Larval fat body49 14 of 4 0.30Down
Larval trachea161 264 of 4 0.97None
Larval carcass123 214 of 4 0.74None
S2 cells (growing)85 24 of 4 0.51Down
Whole fly166 74 of 4

Looking for CG8816-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime