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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8821-RA through 18771 annotations produced 2 hits



achintya /// vismay (achi /// vis):

Annotation Number : CG8821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033748 /// FBgn0033749
Gbrowse : chrUextra:519142-520852 (+) // 46.93 // /// chr2R:8395395-8398311 (-) // 100.0 //
Probeset : 1630768_s_at
Accessions : protein= NP_523714; /// NP_725182; /// NP_725183; /// NP_788337;, nucleotide= NM_078990; /// NM_165911; /// NM_165912; /// NM_176157;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0033748 /// FBgn0033749.
Homophila reports that CG8821 is a close match (7e-25) to human gene HPE4;TGIF (NP_733796), a gene associated with Holoprosencephaly-4, 142946 (3);Hypotrichosis simplex, contiguous gene syndrome with, 605389 (2).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 04 of 4 0.80None
Head19 22 of 4 0.50Down
Eye17 04 of 4 0.41Down
Thoracicoabdominal ganglion19 24 of 4 0.50Down
Salivary gland16 40 of 4 0.40Down
Crop26 34 of 4 0.60Down
Midgut13 10 of 4 0.30Down
Tubule24 03 of 4 0.60Down
Hindgut17 22 of 4 0.40Down
Heart13 14 of 4 0.32Down
Fat body23 50 of 4 0.57Down
Ovary49 14 of 4 1.20None
Testis429 74 of 410.20Up
Male accessory glands42 42 of 4 1.00None
Virgin spermatheca18 22 of 4 0.45Down
Mated spermatheca23 23 of 4 0.56Down
Adult carcass22 20 of 4 0.50Down
Larval CNS50 84 of 4 1.19None
Larval Salivary gland32 11 of 4 0.77Down
Larval midgut14 10 of 4 0.33Down
Larval tubule20 14 of 4 0.50Down
Larval hindgut20 12 of 4 0.49Down
Larval fat body71 304 of 4 1.70None
Larval trachea23 24 of 4 0.57Down
Larval carcass15 10 of 4 0.36Down
S2 cells (growing)122 74 of 4 2.91Up
Whole fly42 24 of 4



vismay (vis):

Annotation Number : CG8821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033748
Gbrowse : chrUextra:519142-520852 (+) // 46.93 // /// chr2R:8395395-8398311 (-) // 100.0 //
Probeset : 1624663_a_at
Accessions : protein= NP_523714; /// NP_788337;, nucleotide= NM_078990; /// NM_176157;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from expression pattern
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0033748.
Homophila reports that CG8821 is a close match (7e-25) to human gene HPE4;TGIF (NP_733796), a gene associated with Holoprosencephaly-4, 142946 (3);Hypotrichosis simplex, contiguous gene syndrome with, 605389 (2).
TRiP has 1 RNAi stocks for FBgn0033748 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033748 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head4 01 of 4 0.20Down
Eye4 00 of 4 0.17Down
Thoracicoabdominal ganglion1 10 of 4 0.10Down
Salivary gland4 10 of 4 0.17Down
Crop3 10 of 4 0.10Down
Midgut5 10 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart1 00 of 4 0.07Down
Fat body1 00 of 4 0.05Down
Ovary2 00 of 4 0.10Down
Testis506 254 of 420.10Up
Male accessory glands21 24 of 4 0.80None
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca2 00 of 4 0.10Down
Adult carcass1 00 of 4 0.10Down
Larval CNS2 00 of 4 0.10Down
Larval Salivary gland4 11 of 4 0.16Down
Larval midgut3 10 of 4 0.13Down
Larval tubule1 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.11Down
Larval fat body46 144 of 4 1.80None
Larval trachea3 20 of 4 0.14Down
Larval carcass4 10 of 4 0.16Down
S2 cells (growing)98 34 of 4 3.89Up
Whole fly25 24 of 4

Looking for CG8821-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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