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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8823-RA through 18771 annotations produced 1 hits



Lip3 (Lip3):

Annotation Number : CG8823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023495
Gbrowse : chr3R:9196032-9197474 (-) // 100.0 //
Probeset : 1628076_at
Accessions : protein= NP_477331;, nucleotide= NM_057983;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0023495.
Homophila reports that CG8823 is a close match (6e-67) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0023495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head4 ± 12 of 4 1.30None
Eye3 ± 10 of 4 0.95None
Thoracicoabdominal ganglion4 ± 10 of 4 1.30None
Salivary gland4 ± 10 of 4 1.19None
Crop5 ± 20 of 4 1.50None
Midgut48 ± 84 of 412.80Up
Tubule4 ± 00 of 4 1.10None
Hindgut4 ± 10 of 4 1.20None
Heart2 ± 10 of 4 0.74None
Fat body5 ± 20 of 4 1.38None
Ovary1 ± 00 of 4 0.40None
Testis4 ± 02 of 4 1.20None
Male accessory glands5 ± 20 of 4 1.40None
Virgin spermatheca2 ± 00 of 4 0.68None
Mated spermatheca5 ± 10 of 4 1.40None
Adult carcass7 ± 30 of 4 1.90None
Larval CNS1 ± 10 of 4 0.47None
Larval Salivary gland1 ± 00 of 4 0.34None
Larval midgut22 ± 54 of 4 5.79None
Larval tubule3 ± 00 of 4 0.90None
Larval hindgut4 ± 00 of 4 1.13None
Larval fat body8 ± 10 of 4 2.20None
Larval trachea0 ± 00 of 4 0.26None
Larval carcass3 ± 10 of 4 0.93None
S2 cells (growing)6 ± 02 of 4 1.70None
Whole fly3 ± 11 of 4

Looking for CG8823-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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