FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8824-RC through 18771 annotations produced 1 hits

fused lobes (fdl):

Annotation Number : CG8824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045063
Gbrowse : chr2R:8375252-8394841 (-) // 100.0 //
Probeset : 1635714_s_at
Accessions : protein= NP_725178; /// NP_725179;, nucleotide= NM_165908; /// NM_165909;
Pathway : 0005770 // late endosome // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assa
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0045063.
Homophila reports that CG8824 is a close match (3e-51) to human gene HEXA;TSD (NP_000511), a gene associated with GM2-gangliosidosis, several forms, 272800 (3);Tay-Sachs disease, 272800 (3);[Hex A pseudodeficiency], 272800 (3).
BioGrid reports that CG8824 interacts with CG9480 .
TRiP has 1 RNAi stocks for FBgn0045063 available for purchase.
VDRC has 2 RNAi stocks for FBgn0045063 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	276 ± 9	4 of 4	1.90	Up
Head	232 ± 18	4 of 4	1.60	Up
Eye	396 ± 25	4 of 4	2.73	Up
Thoracicoabdominal ganglion	239 ± 14	4 of 4	1.60	Up
Salivary gland	214 ± 8	4 of 4	1.48	Up
Crop	142 ± 3	4 of 4	1.00	None
Midgut	31 ± 3	4 of 4	0.20	Down
Tubule	28 ± 2	4 of 4	0.20	Down
Hindgut	65 ± 4	4 of 4	0.40	Down
Heart	128 ± 5	4 of 4	0.89	None
Fat body	121 ± 19	4 of 4	0.84	None
Ovary	302 ± 12	4 of 4	2.10	Up
Testis	43 ± 2	4 of 4	0.30	Down
Male accessory glands	225 ± 5	4 of 4	1.60	Up
Virgin spermatheca	49 ± 2	4 of 4	0.34	Down
Mated spermatheca	54 ± 9	4 of 4	0.38	Down
Adult carcass	154 ± 10	4 of 4	1.10	None
Larval CNS	167 ± 4	4 of 4	1.16	Up
Larval Salivary gland	185 ± 5	4 of 4	1.28	Up
Larval midgut	51 ± 2	4 of 4	0.35	Down
Larval tubule	95 ± 2	4 of 4	0.70	Down
Larval hindgut	137 ± 6	4 of 4	0.95	None
Larval fat body	120 ± 3	4 of 4	0.80	Down
Larval trachea	268 ± 34	4 of 4	1.85	Up
Larval carcass	137 ± 4	4 of 4	0.95	None
S2 cells (growing)	837 ± 11	4 of 4	5.77	Up
Whole fly	145 ± 7	4 of 4

Looking for CG8824-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720