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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8830-RB through 18771 annotations produced 1 hits



(CG8830):

Annotation Number : CG8830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033738
Gbrowse : chr2R:8319406-8324082 (-) // 100.0 //
Probeset : 1631828_s_at
Accessions : protein= NP_610784; /// NP_725167;, nucleotide= NM_136940; /// NM_165900;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0033738.
VDRC has 1 RNAi stocks for FBgn0033738 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 ± 74 of 4 1.70Up
Head99 ± 134 of 4 0.80None
Eye146 ± 54 of 4 1.21Up
Thoracicoabdominal ganglion189 ± 124 of 4 1.60Up
Salivary gland174 ± 204 of 4 1.44None
Crop158 ± 164 of 4 1.30None
Midgut103 ± 34 of 4 0.80Down
Tubule76 ± 14 of 4 0.60Down
Hindgut112 ± 124 of 4 0.90None
Heart154 ± 34 of 4 1.27Up
Fat body106 ± 194 of 4 0.87None
Ovary140 ± 64 of 4 1.20Up
Testis494 ± 184 of 4 4.10Up
Male accessory glands99 ± 114 of 4 0.80None
Virgin spermatheca62 ± 14 of 4 0.52Down
Mated spermatheca79 ± 54 of 4 0.65Down
Adult carcass120 ± 154 of 4 1.00None
Larval CNS152 ± 174 of 4 1.26Up
Larval Salivary gland144 ± 84 of 4 1.19None
Larval midgut105 ± 44 of 4 0.87Down
Larval tubule171 ± 144 of 4 1.40Up
Larval hindgut131 ± 64 of 4 1.08None
Larval fat body162 ± 284 of 4 1.30None
Larval trachea151 ± 94 of 4 1.25Up
Larval carcass94 ± 64 of 4 0.78Down
S2 cells (growing)214 ± 94 of 4 1.77Up
Whole fly121 ± 34 of 4

Looking for CG8830-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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