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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8850-RB through 18771 annotations produced 1 hits



(CG8850):

Annotation Number : CG8850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033708
Gbrowse : chr2R:8186282-8189741 (-) // 100.0 //
Probeset : 1639830_s_at
Accessions : protein= NP_610755; /// NP_725122;, nucleotide= NM_136911; /// NM_165871;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0033708.
BDGP gene expression has embryonic in situ data for CG8850: 12 pix of staining in 2 body parts.
Homophila reports that CG8850 is a close match (2e-64) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 1 RNAi stocks for FBgn0033708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 2.00None
Head5 00 of 4 2.40Up
Eye2 00 of 4 1.20None
Thoracicoabdominal ganglion2 10 of 4 1.10None
Salivary gland6 20 of 4 2.61None
Crop3 10 of 4 1.40None
Midgut3 00 of 4 1.60None
Tubule5 10 of 4 2.10Up
Hindgut2 10 of 4 1.00None
Heart1 00 of 4 0.77None
Fat body8 61 of 4 3.43None
Ovary2 00 of 4 0.80None
Testis5 00 of 4 2.10None
Male accessory glands10 10 of 4 4.30Up
Virgin spermatheca2 00 of 4 1.02None
Mated spermatheca6 21 of 4 2.48None
Adult carcass8 30 of 4 3.40None
Larval CNS2 20 of 4 0.99None
Larval Salivary gland4 20 of 4 1.81None
Larval midgut1 00 of 4 0.73None
Larval tubule741 724 of 4305.70Up
Larval hindgut1 10 of 4 0.69None
Larval fat body844 1134 of 4348.20Up
Larval trachea4 30 of 4 1.97None
Larval carcass92 174 of 438.08Up
S2 cells (growing)3 00 of 4 1.46None
Whole fly2 10 of 4

Looking for CG8850-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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