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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8858-RA through 18771 annotations produced 1 hits



(CG8858):

Annotation Number : CG8858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033698
Gbrowse : chr2R:8079871-8086343 (-) // 100.0 //
Probeset : 1636849_at
Accessions : protein= NP_610746;, nucleotide= NM_136902;
Pathway : 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0000502 // proteasome complex // in
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or st
FlyMine data for FBgn0033698.
TRiP has 1 RNAi stocks for FBgn0033698 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033698 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 14 of 4 1.00None
Head46 ± 24 of 4 0.80Down
Eye69 ± 34 of 4 1.14None
Thoracicoabdominal ganglion61 ± 34 of 4 1.00None
Salivary gland67 ± 54 of 4 1.11None
Crop66 ± 44 of 4 1.10None
Midgut49 ± 34 of 4 0.80None
Tubule51 ± 44 of 4 0.90None
Hindgut53 ± 24 of 4 0.90None
Heart167 ± 54 of 4 2.75Up
Fat body134 ± 124 of 4 2.20Up
Ovary108 ± 54 of 4 1.80Up
Testis47 ± 14 of 4 0.80Down
Male accessory glands90 ± 84 of 4 1.50Up
Virgin spermatheca51 ± 24 of 4 0.84None
Mated spermatheca55 ± 24 of 4 0.90None
Adult carcass102 ± 94 of 4 1.70Up
Larval CNS166 ± 54 of 4 2.73Up
Larval Salivary gland114 ± 14 of 4 1.88Up
Larval midgut60 ± 34 of 4 0.99None
Larval tubule109 ± 14 of 4 1.80Up
Larval hindgut81 ± 34 of 4 1.33Up
Larval fat body57 ± 34 of 4 0.90None
Larval trachea112 ± 154 of 4 1.85Up
Larval carcass90 ± 34 of 4 1.49Up
S2 cells (growing)141 ± 54 of 4 2.32Up
Whole fly60 ± 44 of 4

Looking for CG8858-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime