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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8866-RB through 18771 annotations produced 2 hits



(CG8866):

Annotation Number : CG8866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037679
Gbrowse : chr3R:5157782-5160436 (-) // 100.0 //
Probeset : 1625728_at
Accessions : protein= NP_649882; /// NP_731331;, nucleotide= NM_141625; /// NM_169265;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0037679.
BDGP gene expression has embryonic in situ data for CG8866: 4 pix of staining in 1 body parts.
Homophila reports that CG8866 is a close match (9e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
TRiP has 1 RNAi stocks for FBgn0037679 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 54 of 4 3.10Up
Head65 14 of 4 1.60Up
Eye63 24 of 4 1.57Up
Thoracicoabdominal ganglion135 34 of 4 3.30Up
Salivary gland97 34 of 4 2.38Up
Crop61 14 of 4 1.50Up
Midgut86 24 of 4 2.10Up
Tubule89 04 of 4 2.20Up
Hindgut56 14 of 4 1.40Up
Heart64 44 of 4 1.58Up
Fat body77 24 of 4 1.91Up
Ovary77 44 of 4 1.90Up
Testis24 14 of 4 0.60Down
Male accessory glands116 94 of 4 2.80Up
Virgin spermatheca94 84 of 4 2.31Up
Mated spermatheca90 44 of 4 2.22Up
Adult carcass45 44 of 4 1.10None
Larval CNS93 44 of 4 2.28Up
Larval Salivary gland88 84 of 4 2.18Up
Larval midgut64 44 of 4 1.59Up
Larval tubule156 74 of 4 3.80Up
Larval hindgut69 64 of 4 1.70Up
Larval fat body66 44 of 4 1.60Up
Larval trachea38 34 of 4 0.95None
Larval carcass49 54 of 4 1.21None
S2 cells (growing)23 04 of 4 0.59Down
Whole fly40 24 of 4



(CG8866):

Annotation Number : CG8866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037679
Gbrowse : chr3R:5157782-5160436 (-) // 100.0 //
Probeset : 1640539_a_at
Accessions : protein= NP_649882; /// NP_731331;, nucleotide= NM_141625; /// NM_169265;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0037679.
BDGP gene expression has embryonic in situ data for CG8866: 4 pix of staining in 1 body parts.
Homophila reports that CG8866 is a close match (9e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
TRiP has 1 RNAi stocks for FBgn0037679 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 14 of 4 1.30Up
Head34 14 of 4 0.60Down
Eye27 14 of 4 0.48Down
Thoracicoabdominal ganglion63 34 of 4 1.10None
Salivary gland52 33 of 4 0.93None
Crop33 14 of 4 0.60Down
Midgut54 14 of 4 1.00None
Tubule27 03 of 4 0.50Down
Hindgut31 14 of 4 0.50Down
Heart34 04 of 4 0.61Down
Fat body36 44 of 4 0.64Down
Ovary111 24 of 4 2.00Up
Testis31 24 of 4 0.60Down
Male accessory glands39 24 of 4 0.70Down
Virgin spermatheca13 01 of 4 0.23Down
Mated spermatheca20 04 of 4 0.35Down
Adult carcass25 42 of 4 0.50Down
Larval CNS61 74 of 4 1.07None
Larval Salivary gland40 44 of 4 0.71Down
Larval midgut33 24 of 4 0.59Down
Larval tubule76 24 of 4 1.30Up
Larval hindgut27 34 of 4 0.48Down
Larval fat body54 44 of 4 1.00None
Larval trachea27 24 of 4 0.47Down
Larval carcass24 03 of 4 0.42Down
S2 cells (growing)19 02 of 4 0.35Down
Whole fly57 34 of 4

Looking for CG8866-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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