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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8871-RA through 18771 annotations produced 1 hits



Jonah 25B (Jon25Biii):

Annotation Number : CG8871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031653
Gbrowse : chr2L:4949946-4950763 (-) // 100.0 //
Probeset : 1624506_at
Accessions : protein= NP_608881;, nucleotide= NM_135037;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0031653.
BDGP gene expression has embryonic in situ data for CG8871: 4 pix of staining in 1 body parts.
Homophila reports that CG8871 is a close match (4e-11) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 4 RNAi stocks for FBgn0031653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye8 ± 41 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.00Down
Salivary gland10 ± 41 of 4 0.01Down
Crop6 ± 10 of 4 0.00Down
Midgut5996 ± 2464 of 4 4.60Up
Tubule2 ± 00 of 4 0.00Down
Hindgut9 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.00Down
Fat body4 ± 10 of 4 0.00Down
Ovary3 ± 10 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands11 ± 10 of 4 0.00Down
Virgin spermatheca8 ± 30 of 4 0.01Down
Mated spermatheca6 ± 10 of 4 0.00Down
Adult carcass6 ± 30 of 4 0.00Down
Larval CNS4 ± 10 of 4 0.00Down
Larval Salivary gland6 ± 30 of 4 0.01Down
Larval midgut5973 ± 2484 of 4 4.63Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut6 ± 10 of 4 0.00Down
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea6 ± 30 of 4 0.01Down
Larval carcass3 ± 10 of 4 0.00Down
S2 cells (growing)6 ± 10 of 4 0.01Down
Whole fly1290 ± 2884 of 4

Looking for CG8871-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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