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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8873-RA through 18771 annotations produced 1 hits



jetlag (jet):

Annotation Number : CG8873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031652
Gbrowse : chr2L:4948205-4949751 (-) // 99.72 //
Probeset : 1635474_at
Accessions : protein= NP_001036332; /// NP_608880;, nucleotide= NM_001042867; /// NM_135036;
FlyMine data for FBgn0031652.
TRiP has 1 RNAi stocks for FBgn0031652 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031652 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 1.30Up
Head30 ± 44 of 4 1.20None
Eye56 ± 34 of 4 2.24Up
Thoracicoabdominal ganglion25 ± 14 of 4 1.00None
Salivary gland89 ± 44 of 4 3.52Up
Crop33 ± 44 of 4 1.30None
Midgut34 ± 24 of 4 1.40Up
Tubule39 ± 14 of 4 1.60Up
Hindgut30 ± 14 of 4 1.20None
Heart23 ± 14 of 4 0.94None
Fat body31 ± 74 of 4 1.26None
Ovary33 ± 14 of 4 1.30Up
Testis16 ± 13 of 4 0.60Down
Male accessory glands52 ± 34 of 4 2.10Up
Virgin spermatheca34 ± 44 of 4 1.35None
Mated spermatheca29 ± 24 of 4 1.18None
Adult carcass45 ± 44 of 4 1.80Up
Larval CNS18 ± 24 of 4 0.72Down
Larval Salivary gland22 ± 14 of 4 0.89None
Larval midgut31 ± 24 of 4 1.24None
Larval tubule25 ± 14 of 4 1.00None
Larval hindgut19 ± 44 of 4 0.75None
Larval fat body18 ± 02 of 4 0.70Down
Larval trachea21 ± 44 of 4 0.85None
Larval carcass7 ± 32 of 4 0.31Down
S2 cells (growing)14 ± 14 of 4 0.57Down
Whole fly25 ± 14 of 4

Looking for CG8873-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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