Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8874-RB through 18771 annotations produced 1 hits



Fps oncogene analog (Fps85D):

Annotation Number : CG8874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000723
Gbrowse : chr3R:5193323-5220265 (-) // 100.0 //
Probeset : 1639139_a_at
Accessions : protein= NP_524288; /// NP_731341; /// NP_731342; /// NP_731343;, nucleotide= NM_079564; /// NM_169274; /// NM_169275; /// NM_169276;
Pathway : elongation of leading edge cells // inferred from mutant phenotype /// 0007411 // axon guidance // inferred from mutant
Interpro : amnioserosa morphology change // inferred from mutant phenotype /// 0051017 // actin filament bundle assembly // inferr
FlyMine data for FBgn0000723.
Homophila reports that CG8874 is a close match (1e-11) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
BioGrid reports that CG8874 interacts with CG9014 .
TRiP has 1 RNAi stocks for FBgn0000723 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 34 of 4 1.00None
Head214 ± 74 of 4 2.10Up
Eye679 ± 104 of 4 6.73Up
Thoracicoabdominal ganglion128 ± 64 of 4 1.30Up
Salivary gland71 ± 24 of 4 0.71Down
Crop707 ± 224 of 4 7.00Up
Midgut224 ± 54 of 4 2.20Up
Tubule500 ± 204 of 4 5.00Up
Hindgut494 ± 54 of 4 4.90Up
Heart216 ± 94 of 4 2.14Up
Fat body94 ± 144 of 4 0.94None
Ovary19 ± 24 of 4 0.20Down
Testis35 ± 04 of 4 0.40Down
Male accessory glands134 ± 54 of 4 1.30Up
Virgin spermatheca75 ± 54 of 4 0.75Down
Mated spermatheca96 ± 54 of 4 0.96None
Adult carcass196 ± 64 of 4 2.00Up
Larval CNS206 ± 94 of 4 2.05Up
Larval Salivary gland61 ± 34 of 4 0.60Down
Larval midgut227 ± 254 of 4 2.26Up
Larval tubule370 ± 174 of 4 3.70Up
Larval hindgut350 ± 94 of 4 3.47Up
Larval fat body63 ± 54 of 4 0.60Down
Larval trachea201 ± 204 of 4 2.00Up
Larval carcass439 ± 64 of 4 4.36Up
S2 cells (growing)313 ± 104 of 4 3.10Up
Whole fly100 ± 64 of 4

Looking for CG8874-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime