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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8881-RA through 18771 annotations produced 1 hits



skpB (skpB):

Annotation Number : CG8881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026176
Gbrowse : chr2R:8026888-8027567 (-) // 100.0 //
Probeset : 1636591_at
Accessions : protein= NP_610729;, nucleotide= NM_136885;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0026176.
BioGrid reports that CG8881 interacts with CG9842 CG32042 CG1871 CG32381 CG15043 CG15676 CG9046 CG6235 CG9527 CG4643 CG2944 CG10855 CG3327 CG7948 CG11525 CG5731 CG10805 CG18745 CG14937 CG14317 CG4911 CG7148 CG2010 CG3412 CG1799 CG9316 CG6488 CG17706 CG11120 CG8272 CG13213 CG4221 CG6758 CG11849 CG4184 CG4276 CG32169 CG5003 CG8181 .
VDRC has 3 RNAi stocks for FBgn0026176 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.10Down
Head14 14 of 4 0.20Down
Eye12 22 of 4 0.16Down
Thoracicoabdominal ganglion8 11 of 4 0.10Down
Salivary gland12 10 of 4 0.16Down
Crop8 10 of 4 0.10Down
Midgut21 02 of 4 0.30Down
Tubule5 00 of 4 0.10Down
Hindgut9 22 of 4 0.10Down
Heart4 10 of 4 0.06Down
Fat body8 32 of 4 0.11Down
Ovary5 03 of 4 0.10Down
Testis627 114 of 4 8.10Up
Male accessory glands10 11 of 4 0.10Down
Virgin spermatheca5 21 of 4 0.07Down
Mated spermatheca7 01 of 4 0.09Down
Adult carcass77 104 of 4 1.00None
Larval CNS5 12 of 4 0.07Down
Larval Salivary gland12 30 of 4 0.16Down
Larval midgut18 33 of 4 0.24Down
Larval tubule10 11 of 4 0.10Down
Larval hindgut4 00 of 4 0.06Down
Larval fat body88 404 of 4 1.10None
Larval trachea12 61 of 4 0.16Down
Larval carcass174 44 of 4 2.25Up
S2 cells (growing)33 14 of 4 0.43Down
Whole fly77 24 of 4

Looking for CG8881-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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