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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8882-RA through 18771 annotations produced 1 hits



Trip1 (Trip1):

Annotation Number : CG8882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015834
Gbrowse : chr2L:4966261-4967778 (-) // 100.0 //
Probeset : 1630519_at
Accessions : protein= NP_523478;, nucleotide= NM_078754;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // non-traceable author statement ///
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0015834.
BDGP gene expression has embryonic in situ data for Trip1: 4 pix of staining in 1 body parts.
BioGrid reports that CG8882 interacts with CG9740 CG2189 .
TRiP has 1 RNAi stocks for FBgn0015834 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1262 104 of 4 1.00None
Head1286 404 of 4 1.00None
Eye1580 324 of 4 1.27Up
Thoracicoabdominal ganglion1826 294 of 4 1.50Up
Salivary gland2425 324 of 4 1.95Up
Crop1734 174 of 4 1.40Up
Midgut1395 204 of 4 1.10Up
Tubule1324 404 of 4 1.10None
Hindgut1588 574 of 4 1.30Up
Heart1407 794 of 4 1.13None
Fat body1586 1254 of 4 1.27Up
Ovary1522 114 of 4 1.20Up
Testis400 74 of 4 0.30Down
Male accessory glands3292 1004 of 4 2.60Up
Virgin spermatheca1628 864 of 4 1.31Up
Mated spermatheca1527 524 of 4 1.23Up
Adult carcass1338 304 of 4 1.10None
Larval CNS1535 454 of 4 1.23Up
Larval Salivary gland3022 954 of 4 2.43Up
Larval midgut1064 184 of 4 0.85Down
Larval tubule1729 364 of 4 1.40Up
Larval hindgut1673 464 of 4 1.34Up
Larval fat body1908 2134 of 4 1.50None
Larval trachea1900 254 of 4 1.53Up
Larval carcass1792 444 of 4 1.44Up
S2 cells (growing)2569 254 of 4 2.06Up
Whole fly1245 404 of 4

Looking for CG8882-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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