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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8887-RA through 18771 annotations produced 1 hits



"discs absent ( small):

Annotation Number : CG8887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-46.6
Gbrowse : chr3L:19584401-19591848 (-) // 100.0 //
Probeset : 1629321_at
Accessions : protein= EC:2.1.1.43, nucleotide=
Interpro : 0001700 // embryonic development via the syncytial blastoderm // inferred from mutant phenotype /// 0006350 // transcrip
FlyMine data for chr3-46.6.
Homophila reports that CG8887 is a close match (6e-16) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG8887 interacts with CG6502 CG6502 CG6502 CG32491 CG8651 CG8651 CG8651 CG8651 CG8651 CG8651 CG10388 CG2759 CG2759 CG8787 CG3938 CG12223 CG7776 CG32443 CG5109 CG3886 CG3886 CG9495 CG9495 CG3905 CG9696 CG14941 CG9088 CG12058 CG12058 CG15319 CG3895 CG17743 CG8651 CG8651 CG5595 CG33261 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 14 of 4 1.30None
Head26 ± 23 of 4 0.60None
Eye23 ± 33 of 4 0.52None
Thoracicoabdominal ganglion44 ± 34 of 4 1.00None
Salivary gland34 ± 20 of 4 0.77None
Crop23 ± 20 of 4 0.50None
Midgut27 ± 20 of 4 0.60None
Tubule15 ± 10 of 4 0.30Down
Hindgut30 ± 30 of 4 0.70None
Heart16 ± 33 of 4 0.37Down
Fat body27 ± 30 of 4 0.60None
Ovary118 ± 44 of 4 2.60Up
Testis51 ± 24 of 4 1.10None
Male accessory glands19 ± 50 of 4 0.40Down
Virgin spermatheca8 ± 20 of 4 0.18Down
Mated spermatheca14 ± 40 of 4 0.32Down
Adult carcass31 ± 30 of 4 0.70None
Larval CNS61 ± 64 of 4 1.37None
Larval Salivary gland31 ± 32 of 4 0.70None
Larval midgut27 ± 30 of 4 0.62None
Larval tubule27 ± 10 of 4 0.60None
Larval hindgut24 ± 11 of 4 0.55None
Larval fat body28 ± 02 of 4 0.60None
Larval trachea27 ± 13 of 4 0.61None
Larval carcass29 ± 24 of 4 0.66None
S2 cells (growing)68 ± 24 of 4 1.52Up
Whole fly44 ± 73 of 4

Looking for CG8887-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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