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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8890-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:4975299-4976989 (-) // 100.0 //):

Annotation Number : CG8890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : Gmd
Gbrowse :
Probeset : 1628521_at
Accessions : protein= C7LA78 /// Q9VMW9, nucleotide= EC:1.1.1.271 /// EC:4.2.1.47
FlyMine data for Gmd.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 24 of 4 0.70Down
Head81 24 of 4 0.60Down
Eye37 34 of 4 0.27Down
Thoracicoabdominal ganglion102 64 of 4 0.70Down
Salivary gland175 144 of 4 1.28None
Crop94 34 of 4 0.70Down
Midgut281 154 of 4 2.00Up
Tubule66 34 of 4 0.50Down
Hindgut116 64 of 4 0.80Down
Heart83 34 of 4 0.61Down
Fat body85 134 of 4 0.62Down
Ovary231 94 of 4 1.70Up
Testis56 44 of 4 0.40Down
Male accessory glands724 374 of 4 5.30Up
Virgin spermatheca122 44 of 4 0.89Down
Mated spermatheca133 74 of 4 0.97None
Adult carcass62 24 of 4 0.50Down
Larval CNS298 174 of 4 2.16Up
Larval Salivary gland936 714 of 4 6.80Up
Larval midgut252 164 of 4 1.84Up
Larval tubule79 34 of 4 0.60Down
Larval hindgut197 114 of 4 1.43Up
Larval fat body142 144 of 4 1.00None
Larval trachea184 184 of 4 1.34Up
Larval carcass121 14 of 4 0.88Down
S2 cells (growing)271 44 of 4 1.97Up
Whole fly137 34 of 4

Looking for CG8890-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime