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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8891-RA through 18771 annotations produced 1 hits



(CG8891):

Annotation Number : CG8891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031663
Gbrowse : chr2L:4978565-4979377 (-) // 100.0 //
Probeset : 1625044_at
Accessions : protein= NP_608890;, nucleotide= NM_135046;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0031663.
BDGP gene expression has embryonic in situ data for CG8891: 4 pix of staining in 1 body parts.
Homophila reports that CG8891 is a close match (7e-63) to human gene ITPA (NP_852470), a gene associated with [Inosine triphosphatase deficiency] (3).
VDRC has 3 RNAi stocks for FBgn0031663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 ± 24 of 4 1.10None
Head159 ± 164 of 4 0.90None
Eye117 ± 54 of 4 0.64None
Thoracicoabdominal ganglion206 ± 74 of 4 1.10None
Salivary gland185 ± 134 of 4 1.02None
Crop149 ± 64 of 4 0.80None
Midgut221 ± 64 of 4 1.20None
Tubule183 ± 94 of 4 1.00None
Hindgut154 ± 24 of 4 0.80None
Heart139 ± 74 of 4 0.76None
Fat body179 ± 84 of 4 0.98None
Ovary208 ± 74 of 4 1.10None
Testis45 ± 14 of 4 0.20Down
Male accessory glands227 ± 174 of 4 1.20None
Virgin spermatheca99 ± 104 of 4 0.54None
Mated spermatheca126 ± 44 of 4 0.69None
Adult carcass169 ± 164 of 4 0.90None
Larval CNS347 ± 274 of 4 1.90Up
Larval Salivary gland190 ± 94 of 4 1.04None
Larval midgut141 ± 34 of 4 0.77None
Larval tubule134 ± 24 of 4 0.70None
Larval hindgut120 ± 44 of 4 0.66None
Larval fat body105 ± 124 of 4 0.60None
Larval trachea232 ± 204 of 4 1.27None
Larval carcass179 ± 94 of 4 0.98None
S2 cells (growing)735 ± 164 of 4 4.02Up
Whole fly182 ± 334 of 4

Looking for CG8891-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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