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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8896-RA through 18771 annotations produced 1 hits



18-wheeler (18w):

Annotation Number : CG8896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004364
Gbrowse : chr2R:15999015-16004437 (+) // 100.0 //
Probeset : 1626509_at
Accessions : protein= NP_476814;, nucleotide= NM_057466;
Pathway : 0005624 // membrane fraction // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 00
Interpro : 0004888 // transmembrane receptor activity // inferred from sequence or structural similarity /// 0004888 // transmembra
FlyMine data for FBgn0004364.
Homophila reports that CG8896 is a close match (2e-12) to human gene KIAA1910;SLITRK1 (NP_443142), a gene associated with Tourette syndrome, 137580 (3).
TRiP has 1 RNAi stocks for FBgn0004364 available for purchase.
VDRC has 6 RNAi stocks for FBgn0004364 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 94 of 4 1.50Up
Head400 104 of 4 2.10Up
Eye330 194 of 4 1.76Up
Thoracicoabdominal ganglion316 114 of 4 1.70Up
Salivary gland295 184 of 4 1.58Up
Crop77 34 of 4 0.40Down
Midgut57 14 of 4 0.30Down
Tubule21 23 of 4 0.10Down
Hindgut249 44 of 4 1.30Up
Heart296 74 of 4 1.59Up
Fat body339 284 of 4 1.81Up
Ovary116 124 of 4 0.60Down
Testis39 34 of 4 0.20Down
Male accessory glands35 24 of 4 0.20Down
Virgin spermatheca622 384 of 4 3.33Up
Mated spermatheca653 154 of 4 3.49Up
Adult carcass345 234 of 4 1.80Up
Larval CNS261 374 of 4 1.40Up
Larval Salivary gland48 84 of 4 0.26Down
Larval midgut59 104 of 4 0.32Down
Larval tubule29 34 of 4 0.20Down
Larval hindgut153 54 of 4 0.82Down
Larval fat body55 84 of 4 0.30Down
Larval trachea864 814 of 4 4.62Up
Larval carcass120 184 of 4 0.64Down
S2 cells (growing)68 64 of 4 0.37Down
Whole fly187 44 of 4

Looking for CG8896-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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