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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8902-RA through 18771 annotations produced 1 hits



CG8902 (Nuf2):

Annotation Number : CG8902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031886
Gbrowse : chr2L:7064429-7065833 (-) // 100.0 //
Probeset : 1631363_at
Accessions : protein= NP_609096;, nucleotide= NM_135252;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay ///
FlyMine data for FBgn0031886.
BioGrid reports that CG8902 interacts with CG9938 .
TRiP has 2 RNAi stocks for FBgn0031886 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye4 10 of 4 0.04Down
Thoracicoabdominal ganglion3 00 of 4 0.00Down
Salivary gland1 00 of 4 0.01Down
Crop7 20 of 4 0.10Down
Midgut9 12 of 4 0.10Down
Tubule6 20 of 4 0.10Down
Hindgut7 00 of 4 0.10Down
Heart11 13 of 4 0.09Down
Fat body8 50 of 4 0.07Down
Ovary256 34 of 4 2.10Up
Testis254 154 of 4 2.00Up
Male accessory glands8 10 of 4 0.10Down
Virgin spermatheca7 10 of 4 0.06Down
Mated spermatheca7 00 of 4 0.06Down
Adult carcass7 30 of 4 0.10Down
Larval CNS183 134 of 4 1.48Up
Larval Salivary gland17 22 of 4 0.14Down
Larval midgut15 24 of 4 0.12Down
Larval tubule37 14 of 4 0.30Down
Larval hindgut17 14 of 4 0.14Down
Larval fat body37 143 of 4 0.30Down
Larval trachea55 74 of 4 0.44Down
Larval carcass29 34 of 4 0.24Down
S2 cells (growing)142 74 of 4 1.15None
Whole fly124 24 of 4

Looking for CG8902-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime