Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8905-RA through 18771 annotations produced 1 hits



mitochodnrial SOD (Sod2):

Annotation Number : CG8905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010213
Gbrowse : chr2R:12660420-12661413 (-) // 100.0 //
Probeset : 1622984_at
Accessions : protein= NP_476925;, nucleotide= NM_057577;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from seq
Interpro : 0004784 // superoxide dismutase activity // inferred from sequence or structural similarity /// 0004784 // superoxide di
FlyMine data for FBgn0010213.
BDGP gene expression has embryonic in situ data for Sod2: 4 pix of staining in 1 body parts.
Homophila reports that CG8905 is a close match (8e-54) to human gene (NP_001019637), a gene associated with .
TRiP has 4 RNAi stocks for FBgn0010213 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain757 ± 244 of 4 1.00None
Head986 ± 734 of 4 1.30None
Eye919 ± 294 of 4 1.18Up
Thoracicoabdominal ganglion1228 ± 404 of 4 1.60Up
Salivary gland694 ± 554 of 4 0.89None
Crop822 ± 314 of 4 1.10None
Midgut585 ± 364 of 4 0.80Down
Tubule1193 ± 534 of 4 1.50Up
Hindgut1252 ± 294 of 4 1.60Up
Heart924 ± 334 of 4 1.19Up
Fat body838 ± 674 of 4 1.08None
Ovary721 ± 214 of 4 0.90None
Testis488 ± 144 of 4 0.60Down
Male accessory glands517 ± 124 of 4 0.70Down
Virgin spermatheca825 ± 634 of 4 1.06None
Mated spermatheca667 ± 384 of 4 0.86None
Adult carcass1534 ± 544 of 4 2.00Up
Larval CNS774 ± 854 of 4 1.00None
Larval Salivary gland845 ± 244 of 4 1.09None
Larval midgut558 ± 214 of 4 0.72Down
Larval tubule843 ± 624 of 4 1.10None
Larval hindgut1052 ± 304 of 4 1.35Up
Larval fat body342 ± 144 of 4 0.40Down
Larval trachea652 ± 444 of 4 0.84Down
Larval carcass774 ± 774 of 4 1.00None
S2 cells (growing)713 ± 84 of 4 0.92None
Whole fly777 ± 294 of 4

Looking for CG8905-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime