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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8910-RA through 18771 annotations produced 1 hits



(CG8910):

Annotation Number : CG8910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025833
Gbrowse : chr2R:12762228-12783156 (-) // 100.0 //
Probeset : 1634916_at
Accessions : protein= NP_611167;, nucleotide= NM_137323;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0025833.
BDGP gene expression has embryonic in situ data for EG:EG0003.1: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0025833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain562 ± 164 of 429.30Up
Head99 ± 114 of 4 5.20Up
Eye20 ± 44 of 4 1.09None
Thoracicoabdominal ganglion507 ± 274 of 426.50Up
Salivary gland8 ± 20 of 4 0.43Down
Crop5 ± 10 of 4 0.30Down
Midgut3 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.30Down
Heart4 ± 21 of 4 0.22Down
Fat body10 ± 14 of 4 0.57Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands24 ± 04 of 4 1.30None
Virgin spermatheca6 ± 11 of 4 0.36Down
Mated spermatheca6 ± 12 of 4 0.35Down
Adult carcass16 ± 33 of 4 0.80None
Larval CNS152 ± 124 of 4 7.97Up
Larval Salivary gland4 ± 11 of 4 0.24Down
Larval midgut3 ± 00 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.08Down
Larval fat body5 ± 21 of 4 0.30Down
Larval trachea2 ± 00 of 4 0.13Down
Larval carcass6 ± 12 of 4 0.35Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly19 ± 14 of 4

Looking for CG8910-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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