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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8913-RA through 18771 annotations produced 1 hits



Immune-regulated catalase (Irc):

Annotation Number : CG8913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038465
Gbrowse : chr3R:12828598-12832930 (+) // 100.0 //
Probeset : 1633391_at
Accessions : protein= NP_650584;, nucleotide= NM_142327;
Interpro : 0004096 // catalase activity // inferred from direct assay /// 0004096 // catalase activity // inferred from electronic
FlyMine data for FBgn0038465.
BDGP gene expression has embryonic in situ data for CG8913: 16 pix of staining in 4 body parts.
Homophila reports that CG8913 is a close match (2e-13) to human gene TPO;TPX (NP_783653), a gene associated with Goiter, congenital (3);Hyperthyroidism, congenital (3);Thyroid hormone organification defect IIA, 274500 (3);Total iodide organification defect, 274500 (3).
VDRC has 1 RNAi stocks for FBgn0038465 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain684 ± 324 of 4 2.40Up
Head966 ± 444 of 4 3.50Up
Eye640 ± 584 of 4 2.29Up
Thoracicoabdominal ganglion416 ± 194 of 4 1.50Up
Salivary gland429 ± 124 of 4 1.53Up
Crop726 ± 184 of 4 2.60Up
Midgut25 ± 24 of 4 0.10Down
Tubule136 ± 74 of 4 0.50Down
Hindgut863 ± 94 of 4 3.10Up
Heart1120 ± 694 of 4 4.00Up
Fat body1404 ± 674 of 4 5.02Up
Ovary126 ± 74 of 4 0.50Down
Testis87 ± 34 of 4 0.30Down
Male accessory glands25 ± 44 of 4 0.10Down
Virgin spermatheca2927 ± 944 of 410.46Up
Mated spermatheca2077 ± 2184 of 4 7.42Up
Adult carcass964 ± 264 of 4 3.40Up
Larval CNS220 ± 484 of 4 0.79None
Larval Salivary gland133 ± 94 of 4 0.48Down
Larval midgut32 ± 44 of 4 0.11Down
Larval tubule91 ± 64 of 4 0.30Down
Larval hindgut442 ± 664 of 4 1.58None
Larval fat body2509 ± 2484 of 4 9.00Up
Larval trachea525 ± 934 of 4 1.88Up
Larval carcass155 ± 224 of 4 0.56Down
S2 cells (growing)2521 ± 274 of 4 9.01Up
Whole fly279 ± 364 of 4

Looking for CG8913-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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