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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8920-RC through 18771 annotations produced 1 hits



(CG8920):

Annotation Number : CG8920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027529
Gbrowse : chr2R:16193795-16213478 (+) // 100.0 //
Probeset : 1633382_s_at
Accessions : protein= NP_001163213; /// NP_001163214; /// NP_611474; /// NP_611475; /// NP_722455;, nucleotide= NM_001169742; /// NM_001169743; /// NM_137630; /// NM_137631; /// NM_153771;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0027529.
BDGP gene expression has embryonic in situ data for BcDNA:LD21403: 13 pix of staining in 10 body parts.
TRiP has 1 RNAi stocks for FBgn0027529 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 ± 24 of 4 2.30Up
Head140 ± 44 of 4 1.40Up
Eye172 ± 34 of 4 1.68Up
Thoracicoabdominal ganglion247 ± 94 of 4 2.40Up
Salivary gland166 ± 64 of 4 1.62Up
Crop172 ± 124 of 4 1.70Up
Midgut98 ± 64 of 4 1.00None
Tubule649 ± 904 of 4 6.30Up
Hindgut176 ± 44 of 4 1.70Up
Heart88 ± 54 of 4 0.86None
Fat body121 ± 84 of 4 1.18None
Ovary65 ± 34 of 4 0.60Down
Testis56 ± 14 of 4 0.50Down
Male accessory glands288 ± 144 of 4 2.80Up
Virgin spermatheca111 ± 44 of 4 1.09None
Mated spermatheca107 ± 44 of 4 1.04None
Adult carcass164 ± 94 of 4 1.60Up
Larval CNS119 ± 144 of 4 1.16None
Larval Salivary gland200 ± 104 of 4 1.95Up
Larval midgut322 ± 84 of 4 3.14Up
Larval tubule292 ± 104 of 4 2.90Up
Larval hindgut210 ± 124 of 4 2.05Up
Larval fat body196 ± 144 of 4 1.90Up
Larval trachea150 ± 124 of 4 1.47Up
Larval carcass217 ± 44 of 4 2.12Up
S2 cells (growing)169 ± 24 of 4 1.65Up
Whole fly102 ± 64 of 4

Looking for CG8920-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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