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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8931-RA through 18771 annotations produced 1 hits



(CG8931):

Annotation Number : CG8931
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030717
Gbrowse : chrX:15877839-15879440 (+) // 100.0 //
Probeset : 1629592_at
Accessions : protein= NP_573096;, nucleotide= NM_132868;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0030717.
BDGP gene expression has embryonic in situ data for CG8931: 4 pix of staining in 1 body parts.
BioGrid reports that CG8931 interacts with CG9511 .
VDRC has 1 RNAi stocks for FBgn0030717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 ± 24 of 4 1.30Up
Head125 ± 44 of 4 0.90None
Eye185 ± 24 of 4 1.32Up
Thoracicoabdominal ganglion210 ± 34 of 4 1.50Up
Salivary gland148 ± 144 of 4 1.06None
Crop160 ± 44 of 4 1.10Up
Midgut102 ± 24 of 4 0.70Down
Tubule183 ± 44 of 4 1.30Up
Hindgut155 ± 104 of 4 1.10None
Heart140 ± 44 of 4 1.00None
Fat body129 ± 154 of 4 0.92None
Ovary228 ± 84 of 4 1.60Up
Testis82 ± 04 of 4 0.60Down
Male accessory glands153 ± 74 of 4 1.10None
Virgin spermatheca173 ± 64 of 4 1.24Up
Mated spermatheca189 ± 114 of 4 1.35Up
Adult carcass170 ± 54 of 4 1.20Up
Larval CNS141 ± 84 of 4 1.00None
Larval Salivary gland164 ± 54 of 4 1.17Up
Larval midgut115 ± 34 of 4 0.82Down
Larval tubule164 ± 44 of 4 1.20Up
Larval hindgut143 ± 44 of 4 1.02None
Larval fat body103 ± 54 of 4 0.70Down
Larval trachea127 ± 84 of 4 0.91None
Larval carcass131 ± 44 of 4 0.94None
S2 cells (growing)181 ± 24 of 4 1.29Up
Whole fly140 ± 54 of 4

Looking for CG8931-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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