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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8932-RA through 18771 annotations produced 1 hits



CG31090 (CG42235):

Annotation Number : CG8932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250757
Gbrowse : chr3R:21736433-21738195 (+) // 100.0 //
Probeset : 1627633_at
Accessions : protein= NP_001138111; /// NP_001138112; /// NP_651446; /// NP_651447; /// NP_733129;, nucleotide= NM_001144639; /// NM_001144640; /// NM_143189; /// NM_143189; /// NM_143190; /// NM_143190; /// NM_170250;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0250757.
Homophila reports that CG8932 is a close match (2e-11) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 11 RNAi stocks for FBgn0250757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 0.30Down
Head4 ± 10 of 4 0.10Down
Eye3 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion14 ± 14 of 4 0.40None
Salivary gland8 ± 20 of 4 0.24Down
Crop5 ± 00 of 4 0.10Down
Midgut6 ± 00 of 4 0.20Down
Tubule1763 ± 1764 of 447.80Up
Hindgut5 ± 10 of 4 0.10Down
Heart3 ± 00 of 4 0.09Down
Fat body8 ± 41 of 4 0.24Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 11 of 4 0.10Down
Male accessory glands7 ± 31 of 4 0.20Down
Virgin spermatheca8 ± 22 of 4 0.23Down
Mated spermatheca4 ± 10 of 4 0.12Down
Adult carcass13 ± 30 of 4 0.40None
Larval CNS4 ± 11 of 4 0.11Down
Larval Salivary gland2 ± 00 of 4 0.06Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule1357 ± 404 of 436.80Up
Larval hindgut11 ± 33 of 4 0.31Down
Larval fat body12 ± 22 of 4 0.30None
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass2 ± 10 of 4 0.07Down
S2 cells (growing)4 ± 00 of 4 0.13Down
Whole fly36 ± 84 of 4

Looking for CG8932-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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