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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8933-RA through 18771 annotations produced 1 hits



extradenticle (exd):

Annotation Number : CG8933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000611
Gbrowse : chrX:15886519-15890035 (+) // 99.79 //
Probeset : 1633528_s_at
Accessions : protein= NP_523360; /// NP_727923; /// NP_727924;, nucleotide= NM_078636; /// NM_167478; /// NM_167479;
Pathway : translocation // inferred from mutant phenotype /// 0001654 // eye development // inferred from mutant phenotype /// 00
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0000611.
BDGP gene expression has embryonic in situ data for exd: 30 pix of staining in 41 body parts.
BioGrid reports that CG8933 interacts with CG9188 CG2189 CG2189 CG9015 .
TRiP has 2 RNAi stocks for FBgn0000611 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain581 214 of 4 1.20Up
Head470 304 of 4 1.00None
Eye232 114 of 4 0.48Down
Thoracicoabdominal ganglion515 194 of 4 1.10None
Salivary gland540 64 of 4 1.12Up
Crop805 124 of 4 1.70Up
Midgut434 74 of 4 0.90Down
Tubule737 234 of 4 1.50Up
Hindgut618 24 of 4 1.30Up
Heart397 254 of 4 0.83Down
Fat body489 314 of 4 1.02None
Ovary972 174 of 4 2.00Up
Testis107 44 of 4 0.20Down
Male accessory glands531 294 of 4 1.10None
Virgin spermatheca567 344 of 4 1.18None
Mated spermatheca614 84 of 4 1.28Up
Adult carcass303 134 of 4 0.60Down
Larval CNS1012 744 of 4 2.10Up
Larval Salivary gland612 464 of 4 1.27None
Larval midgut523 254 of 4 1.09None
Larval tubule1097 294 of 4 2.30Up
Larval hindgut853 64 of 4 1.77Up
Larval fat body372 294 of 4 0.80Down
Larval trachea493 224 of 4 1.03None
Larval carcass664 94 of 4 1.38Up
S2 cells (growing)621 64 of 4 1.29Up
Whole fly481 84 of 4

Looking for CG8933-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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