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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8936-RA through 18771 annotations produced 1 hits



Arpc3B (Arpc3B):

Annotation Number : CG8936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0065032
Gbrowse : chrX:16998605-16999885 (-) // 100.0 //
Probeset : 1623961_at
Accessions : protein= NP_001097009; /// NP_573193;, nucleotide= NM_001103539; /// NM_132965;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // non-traceable au
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005200 // structural constituent of cyt
FlyMine data for FBgn0065032.
BioGrid reports that CG8936 interacts with CG9734 .
TRiP has 1 RNAi stocks for FBgn0065032 available for purchase.
VDRC has 2 RNAi stocks for FBgn0065032 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head17 ± 12 of 4 0.20Down
Eye4 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.11Down
Crop10 ± 10 of 4 0.10Down
Midgut1303 ± 264 of 414.50Up
Tubule198 ± 324 of 4 2.20Up
Hindgut160 ± 74 of 4 1.80Up
Heart100 ± 54 of 4 1.12None
Fat body9 ± 20 of 4 0.10Down
Ovary4 ± 00 of 4 0.00Down
Testis36 ± 24 of 4 0.40Down
Male accessory glands20 ± 90 of 4 0.20Down
Virgin spermatheca58 ± 14 of 4 0.65None
Mated spermatheca83 ± 84 of 4 0.93None
Adult carcass14 ± 11 of 4 0.20Down
Larval CNS5 ± 10 of 4 0.06Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut1056 ± 214 of 411.77Up
Larval tubule856 ± 64 of 4 9.50Up
Larval hindgut197 ± 134 of 4 2.20Up
Larval fat body31 ± 54 of 4 0.30Down
Larval trachea23 ± 44 of 4 0.26Down
Larval carcass56 ± 34 of 4 0.62None
S2 cells (growing)184 ± 64 of 4 2.06Up
Whole fly89 ± 124 of 4

Looking for CG8936-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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