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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8937-RA through 18771 annotations produced 2 hits



Heat shock protein cognate 1 (Hsc70-1):

Annotation Number : CG8937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001216
Gbrowse : chr3L:13967532-13970879 (+) // 100.0 //
Probeset : 1627963_s_at
Accessions : protein= NP_524063; /// NP_729940; /// NP_729941;, nucleotide= NM_079339; /// NM_168568; /// NM_168569;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred fr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0001216.
TRiP has 1 RNAi stocks for FBgn0001216 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001216 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head40 ± 54 of 4 0.30Down
Eye14 ± 12 of 4 0.10Down
Thoracicoabdominal ganglion13 ± 12 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.04Down
Crop35 ± 21 of 4 0.30Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut17 ± 11 of 4 0.10Down
Heart24 ± 23 of 4 0.18Down
Fat body2 ± 20 of 4 0.02Down
Ovary3 ± 10 of 4 0.00Down
Testis620 ± 284 of 4 4.50Up
Male accessory glands8 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.03Down
Mated spermatheca4 ± 10 of 4 0.03Down
Adult carcass424 ± 164 of 4 3.10Up
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body45 ± 261 of 4 0.30Down
Larval trachea4 ± 40 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly136 ± 104 of 4



Heat shock protein cognate 1 (Hsc70-1):

Annotation Number : CG8937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001216
Gbrowse : chr3L:13967276-13968969 (+) // 100.0 //
Probeset : 1639380_a_at
Accessions : protein= NP_524063; /// NP_729940; /// NP_729941;, nucleotide= NM_079339; /// NM_168568; /// NM_168569;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred fr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0001216.
TRiP has 1 RNAi stocks for FBgn0001216 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001216 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head149 ± 204 of 4 0.70Down
Eye34 ± 84 of 4 0.15Down
Thoracicoabdominal ganglion22 ± 34 of 4 0.10Down
Salivary gland14 ± 40 of 4 0.06Down
Crop53 ± 04 of 4 0.20Down
Midgut9 ± 20 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut41 ± 24 of 4 0.20Down
Heart78 ± 84 of 4 0.35Down
Fat body7 ± 40 of 4 0.03Down
Ovary3 ± 00 of 4 0.00Down
Testis154 ± 74 of 4 0.70Down
Male accessory glands18 ± 32 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.02Down
Mated spermatheca5 ± 10 of 4 0.03Down
Adult carcass890 ± 344 of 4 4.00Up
Larval CNS3 ± 30 of 4 0.02Down
Larval Salivary gland4 ± 10 of 4 0.02Down
Larval midgut7 ± 20 of 4 0.03Down
Larval tubule7 ± 20 of 4 0.00Down
Larval hindgut10 ± 20 of 4 0.05Down
Larval fat body13 ± 51 of 4 0.10Down
Larval trachea7 ± 10 of 4 0.04Down
Larval carcass7 ± 21 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly221 ± 104 of 4

Looking for CG8937-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime