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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8942-RA through 18771 annotations produced 1 hits



nimrod C1 (nimC1):

Annotation Number : CG8942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259896
Gbrowse : chr2L:13974116-13976753 (-) // 100.0 //
Probeset : 1639502_at
Accessions : protein= NP_609693;, nucleotide= NM_135849;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // inferred from seq
FlyMine data for FBgn0259896.
Homophila reports that CG8942 is a close match (1e-19) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG8942 interacts with CG8981 CG9075 CG9312 CG9768 .
TRiP has 1 RNAi stocks for FBgn0259896 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 54 of 4 1.70None
Head135 104 of 4 6.30Up
Eye34 74 of 4 1.62None
Thoracicoabdominal ganglion24 24 of 4 1.10None
Salivary gland20 42 of 4 0.97None
Crop12 12 of 4 0.60None
Midgut14 31 of 4 0.70None
Tubule5 00 of 4 0.20Down
Hindgut5 21 of 4 0.30Down
Heart702 164 of 432.87Up
Fat body33 74 of 4 1.56None
Ovary3 10 of 4 0.20Down
Testis13 14 of 4 0.60None
Male accessory glands6 00 of 4 0.30Down
Virgin spermatheca17 04 of 4 0.79None
Mated spermatheca19 24 of 4 0.90None
Adult carcass153 64 of 4 7.20Up
Larval CNS9 13 of 4 0.42Down
Larval Salivary gland5 20 of 4 0.26Down
Larval midgut8 20 of 4 0.40Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut21 34 of 4 0.99None
Larval fat body26 63 of 4 1.20None
Larval trachea86 214 of 4 4.02Up
Larval carcass213 144 of 4 9.97Up
S2 cells (growing)6 00 of 4 0.30Down
Whole fly21 34 of 4

Looking for CG8942-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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