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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8948-RA through 18771 annotations produced 1 hits



Graf (Graf):

Annotation Number : CG8948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030685
Gbrowse : chrX:15645706-15654678 (-) // 100.0 //
Probeset : 1634307_at
Accessions : protein= NP_573070; /// NP_996441; /// NP_996442; /// NP_996443; /// NP_996444; /// NP_996445;, nucleotide= NM_132842; /// NM_206718; /// NM_206719; /// NM_206720; /// NM_206721; /// NM_206722;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005100 // Rho GTPase activator activity
FlyMine data for FBgn0030685.
Homophila reports that CG8948 is a close match (9e-11) to human gene DLC1 (NP_006085), a gene associated with Colorectal cancer, somatic (3).
TRiP has 1 RNAi stocks for FBgn0030685 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030685 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain416 ± 104 of 4 1.70Up
Head247 ± 54 of 4 1.00None
Eye339 ± 184 of 4 1.41Up
Thoracicoabdominal ganglion328 ± 204 of 4 1.40Up
Salivary gland272 ± 174 of 4 1.14None
Crop476 ± 174 of 4 2.00Up
Midgut471 ± 214 of 4 2.00Up
Tubule249 ± 44 of 4 1.00Up
Hindgut327 ± 134 of 4 1.40Up
Heart491 ± 324 of 4 2.05Up
Fat body513 ± 634 of 4 2.14Up
Ovary484 ± 74 of 4 2.00Up
Testis187 ± 84 of 4 0.80Down
Male accessory glands169 ± 54 of 4 0.70Down
Virgin spermatheca523 ± 184 of 4 2.18Up
Mated spermatheca559 ± 314 of 4 2.33Up
Adult carcass197 ± 34 of 4 0.80Down
Larval CNS424 ± 414 of 4 1.77Up
Larval Salivary gland391 ± 254 of 4 1.63Up
Larval midgut833 ± 404 of 4 3.48Up
Larval tubule237 ± 64 of 4 1.00None
Larval hindgut545 ± 244 of 4 2.28Up
Larval fat body216 ± 174 of 4 0.90None
Larval trachea467 ± 244 of 4 1.95Up
Larval carcass274 ± 94 of 4 1.15None
S2 cells (growing)656 ± 244 of 4 2.74Up
Whole fly239 ± 114 of 4

Looking for CG8948-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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