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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8950-RA through 18771 annotations produced 1 hits



(CG8950):

Annotation Number : CG8950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034186
Gbrowse : chr2R:12947448-12950139 (-) // 100.0 //
Probeset : 1632283_at
Accessions : protein= NP_611184;, nucleotide= NM_137340;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034186.
BDGP gene expression has embryonic in situ data for CG8950: 8 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034186 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 0.50Down
Head18 ± 24 of 4 0.30Down
Eye15 ± 04 of 4 0.30Down
Thoracicoabdominal ganglion20 ± 04 of 4 0.40Down
Salivary gland38 ± 44 of 4 0.73Down
Crop23 ± 24 of 4 0.40Down
Midgut46 ± 54 of 4 0.90None
Tubule24 ± 04 of 4 0.50Down
Hindgut26 ± 14 of 4 0.50Down
Heart9 ± 14 of 4 0.19Down
Fat body13 ± 53 of 4 0.26Down
Ovary100 ± 34 of 4 1.90Up
Testis20 ± 14 of 4 0.40Down
Male accessory glands30 ± 24 of 4 0.60Down
Virgin spermatheca15 ± 04 of 4 0.29Down
Mated spermatheca19 ± 24 of 4 0.38Down
Adult carcass23 ± 31 of 4 0.40Down
Larval CNS42 ± 24 of 4 0.80Down
Larval Salivary gland33 ± 34 of 4 0.64Down
Larval midgut30 ± 14 of 4 0.57Down
Larval tubule27 ± 14 of 4 0.50Down
Larval hindgut30 ± 14 of 4 0.57Down
Larval fat body23 ± 14 of 4 0.40Down
Larval trachea17 ± 34 of 4 0.34Down
Larval carcass28 ± 04 of 4 0.54Down
S2 cells (growing)75 ± 14 of 4 1.44Up
Whole fly52 ± 24 of 4

Looking for CG8950-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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