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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8954-RA through 18771 annotations produced 1 hits



Smg5 (Smg5):

Annotation Number : CG8954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019890
Gbrowse : chr2L:13899352-13904659 (-) // 100.0 //
Probeset : 1627564_s_at
Accessions : protein= NP_609685; /// NP_723851;, nucleotide= NM_135841; /// NM_165069;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0016246 // RNA interference // inferred from mutant pheno
FlyMine data for FBgn0019890.
BDGP gene expression has embryonic in situ data for CG8954: 10 pix of staining in 14 body parts.
TRiP has 1 RNAi stocks for FBgn0019890 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019890 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain612 244 of 4 4.40Up
Head211 64 of 4 1.50Up
Eye343 184 of 4 2.48Up
Thoracicoabdominal ganglion516 224 of 4 3.70Up
Salivary gland273 244 of 4 1.98Up
Crop193 114 of 4 1.40Up
Midgut136 34 of 4 1.00None
Tubule268 184 of 4 1.90Up
Hindgut167 54 of 4 1.20Up
Heart296 254 of 4 2.14Up
Fat body213 564 of 4 1.54None
Ovary138 44 of 4 1.00None
Testis261 224 of 4 1.90Up
Male accessory glands213 144 of 4 1.50Up
Virgin spermatheca261 534 of 4 1.89None
Mated spermatheca260 154 of 4 1.88Up
Adult carcass221 134 of 4 1.60Up
Larval CNS304 404 of 4 2.19Up
Larval Salivary gland362 454 of 4 2.61Up
Larval midgut156 264 of 4 1.13None
Larval tubule354 244 of 4 2.60Up
Larval hindgut154 94 of 4 1.12None
Larval fat body203 144 of 4 1.50Up
Larval trachea249 284 of 4 1.80Up
Larval carcass221 444 of 4 1.60None
S2 cells (growing)192 144 of 4 1.39Up
Whole fly138 94 of 4

Looking for CG8954-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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