FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8962-RA through 18771 annotations produced 1 hits

Platelet-activating factor acetylhydrolase alpha (Paf-AHalpha):

Annotation Number : CG8962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025809
Gbrowse : chrX:15678041-15679612 (-) // 100.0 //
Probeset : 1627403_s_at
Accessions : protein= NP_525089; /// NP_727895;, nucleotide= NM_080350; /// NM_167461;
Interpro : 0003847 // 1-alkyl-2-acetylglycerophosphocholine esterase activity // inferred from direct assay /// 0003847 // 1-alkyl-
FlyMine data for FBgn0025809.
BDGP gene expression has embryonic in situ data for Paf-AHalpha: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0025809 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	249 ± 6	4 of 4	0.90	Down
Head	130 ± 7	4 of 4	0.40	Down
Eye	204 ± 4	4 of 4	0.70	Down
Thoracicoabdominal ganglion	210 ± 4	4 of 4	0.70	Down
Salivary gland	171 ± 9	4 of 4	0.58	Down
Crop	242 ± 16	4 of 4	0.80	Down
Midgut	66 ± 2	4 of 4	0.20	Down
Tubule	100 ± 8	4 of 4	0.30	Down
Hindgut	117 ± 3	4 of 4	0.40	Down
Heart	104 ± 5	4 of 4	0.36	Down
Fat body	63 ± 5	4 of 4	0.22	Down
Ovary	693 ± 14	4 of 4	2.40	Up
Testis	250 ± 10	4 of 4	0.90	Down
Male accessory glands	181 ± 3	4 of 4	0.60	Down
Virgin spermatheca	96 ± 3	4 of 4	0.33	Down
Mated spermatheca	117 ± 9	4 of 4	0.40	Down
Adult carcass	64 ± 4	4 of 4	0.20	Down
Larval CNS	660 ± 37	4 of 4	2.25	Up
Larval Salivary gland	342 ± 24	4 of 4	1.17	None
Larval midgut	68 ± 4	4 of 4	0.23	Down
Larval tubule	162 ± 7	4 of 4	0.60	Down
Larval hindgut	205 ± 3	4 of 4	0.70	Down
Larval fat body	211 ± 6	4 of 4	0.70	Down
Larval trachea	220 ± 24	4 of 4	0.75	Down
Larval carcass	132 ± 8	4 of 4	0.45	Down
S2 cells (growing)	142 ± 3	4 of 4	0.49	Down
Whole fly	293 ± 11	4 of 4

Looking for CG8962-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720