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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8967-RA through 18771 annotations produced 1 hits



Off-track (otk):

Annotation Number : CG8967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004839
Gbrowse : chr2R:7888982-7907329 (-) // 100.0 //
Probeset : 1633753_at
Accessions : protein= NP_523705;, nucleotide= NM_078981;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from
FlyMine data for FBgn0004839.
Homophila reports that CG8967 is a close match (9e-12) to human gene CRAF;NS5;RAF1 (NP_002871), a gene associated with LEOPARD syndrome 2, 611554 (3);Noonan syndrome 5, 611553 (3).
BioGrid reports that CG8967 interacts with CG18405 CG18405 .
TRiP has 1 RNAi stocks for FBgn0004839 available for purchase.
VDRC has 6 RNAi stocks for FBgn0004839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 34 of 4 3.40Up
Head9 14 of 4 0.70None
Eye3 00 of 4 0.23Down
Thoracicoabdominal ganglion24 14 of 4 1.70Up
Salivary gland15 11 of 4 1.10None
Crop19 14 of 4 1.40None
Midgut14 14 of 4 1.10None
Tubule21 14 of 4 1.60Up
Hindgut60 34 of 4 4.30Up
Heart26 34 of 4 1.89Up
Fat body33 54 of 4 2.39Up
Ovary3 02 of 4 0.30Down
Testis8 04 of 4 0.60Down
Male accessory glands6 11 of 4 0.50Down
Virgin spermatheca9 12 of 4 0.65None
Mated spermatheca6 21 of 4 0.46Down
Adult carcass18 23 of 4 1.30None
Larval CNS592 274 of 442.47Up
Larval Salivary gland8 22 of 4 0.62None
Larval midgut26 24 of 4 1.93Up
Larval tubule7 04 of 4 0.50Down
Larval hindgut54 24 of 4 3.90Up
Larval fat body14 24 of 4 1.00None
Larval trachea18 24 of 4 1.30None
Larval carcass18 24 of 4 1.29None
S2 cells (growing)1 00 of 4 0.14Down
Whole fly14 14 of 4

Looking for CG8967-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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