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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8972-RA through 18771 annotations produced 1 hits



rhomboid-7 (rho-7):

Annotation Number : CG8972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033672
Gbrowse : chr2R:7874218-7876261 (-) // 100.0 //
Probeset : 1627697_at
Accessions : protein= NP_523704;, nucleotide= NM_078980;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0004252 // serine-type endopeptidase activity // inferred from electronic annotation
FlyMine data for FBgn0033672.
BDGP gene expression has embryonic in situ data for rho-7: 6 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0033672 available for purchase.
VDRC has 5 RNAi stocks for FBgn0033672 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 ± 74 of 4 1.60Up
Head127 ± 54 of 4 1.00None
Eye200 ± 44 of 4 1.53Up
Thoracicoabdominal ganglion181 ± 54 of 4 1.40Up
Salivary gland148 ± 74 of 4 1.13None
Crop98 ± 14 of 4 0.80Down
Midgut133 ± 24 of 4 1.00None
Tubule146 ± 94 of 4 1.10None
Hindgut132 ± 34 of 4 1.00None
Heart120 ± 44 of 4 0.92None
Fat body118 ± 274 of 4 0.91None
Ovary178 ± 64 of 4 1.40Up
Testis426 ± 54 of 4 3.30Up
Male accessory glands152 ± 154 of 4 1.20None
Virgin spermatheca131 ± 74 of 4 1.01None
Mated spermatheca125 ± 44 of 4 0.95None
Adult carcass124 ± 114 of 4 0.90None
Larval CNS145 ± 34 of 4 1.11None
Larval Salivary gland217 ± 64 of 4 1.66Up
Larval midgut162 ± 84 of 4 1.24Up
Larval tubule181 ± 114 of 4 1.40Up
Larval hindgut157 ± 44 of 4 1.20Up
Larval fat body156 ± 44 of 4 1.20Up
Larval trachea165 ± 124 of 4 1.26Up
Larval carcass126 ± 14 of 4 0.97None
S2 cells (growing)228 ± 14 of 4 1.75Up
Whole fly131 ± 64 of 4

Looking for CG8972-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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