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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8978-RB through 18771 annotations produced 1 hits



Suppressor of profilin 2 (Sop2):

Annotation Number : CG8978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001961
Gbrowse : chr2L:13827931-13829739 (-) // 100.0 //
Probeset : 1626492_s_at
Accessions : protein= NP_476596; /// NP_723845;, nucleotide= NM_057248; /// NM_165063;
Pathway : nurse cell to oocyte // inferred from mutant phenotype /// 0007409 // axonogenesis // inferred from genetic interaction
Interpro : 0005856 // cytoskeleton // inferred from electronic annotation /// 0005885 // Arp2/3 protein complex // non-traceable au
FlyMine data for FBgn0001961.
BDGP gene expression has embryonic in situ data for Sop2: 14 pix of staining in 13 body parts.
TRiP has 1 RNAi stocks for FBgn0001961 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001961 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 34 of 4 1.90Up
Head126 104 of 4 1.30None
Eye293 94 of 4 3.08Up
Thoracicoabdominal ganglion304 134 of 4 3.20Up
Salivary gland132 214 of 4 1.39None
Crop109 94 of 4 1.10None
Midgut245 134 of 4 2.60Up
Tubule162 154 of 4 1.70Up
Hindgut152 124 of 4 1.60Up
Heart172 34 of 4 1.81Up
Fat body87 54 of 4 0.92None
Ovary100 14 of 4 1.10None
Testis188 64 of 4 2.00Up
Male accessory glands88 24 of 4 0.90None
Virgin spermatheca37 23 of 4 0.39Down
Mated spermatheca44 34 of 4 0.46Down
Adult carcass172 154 of 4 1.80Up
Larval CNS190 284 of 4 2.00Up
Larval Salivary gland474 274 of 4 4.97Up
Larval midgut1120 784 of 411.74Up
Larval tubule352 64 of 4 3.70Up
Larval hindgut593 134 of 4 6.22Up
Larval fat body207 394 of 4 2.20None
Larval trachea396 304 of 4 4.15Up
Larval carcass222 124 of 4 2.33Up
S2 cells (growing)1483 624 of 415.55Up
Whole fly95 94 of 4

Looking for CG8978-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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