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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8980-RA through 18771 annotations produced 1 hits



Nuclear inhibitor of Protein phosphatase 1 (NiPp1):

Annotation Number : CG8980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026402
Gbrowse : chr2R:12891061-12892604 (-) // 100.0 //
Probeset : 1627539_at
Accessions : protein= NP_611177;, nucleotide= NM_137333;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0016607 // nuclear speck // inferred from dire
Interpro : 0003729 // mRNA binding // inferred from direct assay /// 0004864 // phosphoprotein phosphatase inhibitor activity // in
FlyMine data for FBgn0026402.
BDGP gene expression has embryonic in situ data for NiPp-1: 4 pix of staining in 1 body parts.
BioGrid reports that CG8980 interacts with CG2096 CG9156 CG6593 CG7904 CG5650 CG10574 .
TRiP has 1 RNAi stocks for FBgn0026402 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 54 of 4 1.50Up
Head60 24 of 4 0.60Down
Eye52 24 of 4 0.52Down
Thoracicoabdominal ganglion90 54 of 4 0.90None
Salivary gland63 54 of 4 0.62Down
Crop51 54 of 4 0.50Down
Midgut51 24 of 4 0.50Down
Tubule28 33 of 4 0.30Down
Hindgut37 44 of 4 0.40Down
Heart24 14 of 4 0.24Down
Fat body36 24 of 4 0.36Down
Ovary178 24 of 4 1.70Up
Testis181 114 of 4 1.80Up
Male accessory glands30 34 of 4 0.30Down
Virgin spermatheca25 44 of 4 0.25Down
Mated spermatheca24 14 of 4 0.24Down
Adult carcass34 24 of 4 0.30Down
Larval CNS184 74 of 4 1.80Up
Larval Salivary gland54 34 of 4 0.53Down
Larval midgut45 34 of 4 0.45Down
Larval tubule33 14 of 4 0.30Down
Larval hindgut46 24 of 4 0.46Down
Larval fat body52 114 of 4 0.50Down
Larval trachea76 124 of 4 0.75Down
Larval carcass50 14 of 4 0.49Down
S2 cells (growing)134 24 of 4 1.32Up
Whole fly102 64 of 4

Looking for CG8980-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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