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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8982-RA through 18771 annotations produced 1 hits



ovulin (Acp26Aa):

Annotation Number : CG8982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002855
Gbrowse : chr2L:5892882-5893896 (-) // 100.0 //
Probeset : 1638714_at
Accessions : protein= NP_476644;, nucleotide= NM_057296;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // non-tracea
Interpro : 0005179 // hormone activity // non-traceable author statement /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0002855.
VDRC has 2 RNAi stocks for FBgn0002855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 21 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.01Down
Crop4 ± 11 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body3 ± 30 of 4 0.00Down
Ovary3 ± 11 of 4 0.00Down
Testis68 ± 294 of 4 0.10Down
Male accessory glands11583 ± 3304 of 414.00Up
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca4 ± 01 of 4 0.01Down
Adult carcass60 ± 153 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland5 ± 20 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.00Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass2 ± 10 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly828 ± 1024 of 4

Looking for CG8982-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime