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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8985-RA through 18771 annotations produced 1 hits



chr3L:2338787-2344351 (+) // 100.0 // (Dromyosuppressin receptor 1):

Annotation Number : CG8985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624469_at
Accessions : protein= , nucleotide= NP_647713;
Pathway : 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 02 of 4 5.50Up
Head8 ± 20 of 4 3.40None
Eye6 ± 20 of 4 2.65None
Thoracicoabdominal ganglion8 ± 00 of 4 3.50Up
Salivary gland8 ± 20 of 4 3.61None
Crop364 ± 334 of 4148.60Up
Midgut2 ± 00 of 4 1.10None
Tubule3 ± 00 of 4 1.50Up
Hindgut2 ± 00 of 4 0.80None
Heart6 ± 10 of 4 2.68Up
Fat body6 ± 10 of 4 2.70Up
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.60None
Male accessory glands4 ± 20 of 4 1.80None
Virgin spermatheca6 ± 10 of 4 2.44None
Mated spermatheca3 ± 10 of 4 1.51None
Adult carcass10 ± 10 of 4 4.20Up
Larval CNS6 ± 10 of 4 2.52Up
Larval Salivary gland5 ± 20 of 4 2.37None
Larval midgut3 ± 10 of 4 1.33None
Larval tubule4 ± 10 of 4 1.80None
Larval hindgut3 ± 10 of 4 1.43None
Larval fat body4 ± 10 of 4 1.60None
Larval trachea2 ± 20 of 4 1.14None
Larval carcass7 ± 10 of 4 2.87None
S2 cells (growing)3 ± 00 of 4 1.43None
Whole fly2 ± 00 of 4

Looking for CG8985-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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