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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8986-RA through 18771 annotations produced 1 hits



CG8986 (TwdlBeta):

Annotation Number : CG8986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033658
Gbrowse : chr2R:7750041-7750753 (-) // 99.44 //
Probeset : 1641005_at
Accessions : protein= NP_610707;, nucleotide= NM_136863;
FlyMine data for FBgn0033658.
VDRC has 1 RNAi stocks for FBgn0033658 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head2 ± 10 of 4 0.50None
Eye19 ± 72 of 4 3.37None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20None
Salivary gland9 ± 50 of 4 1.57None
Crop8 ± 20 of 4 1.50None
Midgut11 ± 10 of 4 1.90None
Tubule7 ± 00 of 4 1.30None
Hindgut17 ± 10 of 4 2.90Up
Heart11 ± 33 of 4 1.97None
Fat body16 ± 30 of 4 2.78Up
Ovary2 ± 10 of 4 0.40None
Testis1 ± 00 of 4 0.30None
Male accessory glands2 ± 00 of 4 0.40None
Virgin spermatheca8 ± 00 of 4 1.39None
Mated spermatheca5 ± 20 of 4 0.94None
Adult carcass3 ± 00 of 4 0.60None
Larval CNS20 ± 101 of 4 3.50None
Larval Salivary gland6 ± 20 of 4 1.03None
Larval midgut62 ± 54 of 410.55Up
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut66 ± 44 of 411.18Up
Larval fat body7 ± 20 of 4 1.20None
Larval trachea2594 ± 4524 of 4439.72Up
Larval carcass88 ± 54 of 414.96Up
S2 cells (growing)1 ± 00 of 4 0.24None
Whole fly5 ± 20 of 4

Looking for CG8986-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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