FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8989-RA through 18771 annotations produced 1 hits

histone H3.3 variant (His3.3B):

Annotation Number : CG8989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004828
Gbrowse : chrX:9047270-9050717 (-) // 100.0 //
Probeset : 1623222_s_at
Accessions : protein= NP_511095; /// NP_523479; /// NP_723056; /// NP_727314; /// NP_788892;, nucleotide= NM_078540; /// NM_078755; /// NM_164624; /// NM_167180; /// NM_176719;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from elec
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0004828.
BioGrid reports that CG8989 interacts with CG9383 .
TRiP has 1 RNAi stocks for FBgn0004828 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004828 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1404 ± 31	4 of 4	1.80	Up
Head	1097 ± 103	4 of 4	1.40	None
Eye	1489 ± 114	4 of 4	1.87	Up
Thoracicoabdominal ganglion	1082 ± 96	4 of 4	1.40	None
Salivary gland	1175 ± 29	4 of 4	1.48	Up
Crop	1072 ± 25	4 of 4	1.30	Up
Midgut	600 ± 30	4 of 4	0.80	Down
Tubule	524 ± 39	4 of 4	0.70	Down
Hindgut	938 ± 22	4 of 4	1.20	Up
Heart	938 ± 32	4 of 4	1.18	Up
Fat body	473 ± 85	4 of 4	0.59	Down
Ovary	1145 ± 39	4 of 4	1.40	Up
Testis	241 ± 20	4 of 4	0.30	Down
Male accessory glands	864 ± 31	4 of 4	1.10	None
Virgin spermatheca	487 ± 16	4 of 4	0.61	Down
Mated spermatheca	533 ± 35	4 of 4	0.67	Down
Adult carcass	568 ± 31	4 of 4	0.70	Down
Larval CNS	1636 ± 70	4 of 4	2.06	Up
Larval Salivary gland	689 ± 25	4 of 4	0.87	None
Larval midgut	381 ± 8	4 of 4	0.48	Down
Larval tubule	814 ± 9	4 of 4	1.00	None
Larval hindgut	803 ± 23	4 of 4	1.01	None
Larval fat body	867 ± 108	4 of 4	1.10	None
Larval trachea	1480 ± 172	4 of 4	1.86	Up
Larval carcass	623 ± 49	4 of 4	0.78	Down
S2 cells (growing)	2323 ± 68	4 of 4	2.92	Up
Whole fly	795 ± 41	4 of 4

Looking for CG8989-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720