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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8997-RA through 18771 annotations produced 1 hits



/// (CG8997 /// DsimCG8997):

Annotation Number : CG8997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028920
Gbrowse : chr2L:13844415-13845305 (-) // 100.0 //
Probeset : 1629520_at
Accessions : protein= NP_609681;, nucleotide= NM_135837;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028920.
VDRC has 3 RNAi stocks for FBgn0028920 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head3 20 of 4 0.00Down
Eye5 31 of 4 0.01Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland4 00 of 4 0.00Down
Crop2 10 of 4 0.00Down
Midgut6019 1824 of 4 6.20Up
Tubule1 00 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart3 00 of 4 0.00Down
Fat body2 10 of 4 0.00Down
Ovary1 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca3 21 of 4 0.00Down
Mated spermatheca1 00 of 4 0.00Down
Adult carcass3 10 of 4 0.00Down
Larval CNS1 10 of 4 0.00Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut5871 1664 of 4 6.06Up
Larval tubule1 00 of 4 0.00Down
Larval hindgut87 164 of 4 0.09Down
Larval fat body87 374 of 4 0.10Down
Larval trachea57 1022 of 4 0.06Down
Larval carcass0 00 of 4 0.00Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly968 2054 of 4

Looking for CG8997-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime