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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9015-RB through 18771 annotations produced 1 hits

engrailed (en):

Annotation Number : CG9015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000577
Gbrowse : chr2R:7411508-7415715 (-) // 100.0 //
Probeset : 1627445_s_at
Accessions : protein= NP_523700; /// NP_725059;, nucleotide= NM_078976; /// NM_165841;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : imaginal disc // traceable author statement /// 0007485 // imaginal disc-derived male genitalia development // traceabl
FlyMine data for FBgn0000577.
BDGP gene expression has embryonic in situ data for en: 75 pix of staining in 35 body parts.
Homophila reports that CG9015 is a close match (3e-11) to human gene HOXD4;HOX4B (NP_055436), a gene associated with {Leukemia, acute lymphoblastic, susceptibility to} (3).
BioGrid reports that CG9015 interacts with CG8367 CG2125 CG2125 CG8933 CG3388 CG17117 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 CG17835 .
TRiP has 2 RNAi stocks for FBgn0000577 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000577 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 04 of 4 1.20None
Head21 24 of 4 1.80Up
Eye39 34 of 4 3.28Up
Thoracicoabdominal ganglion43 24 of 4 3.60Up
Salivary gland17 42 of 4 1.47None
Crop7 11 of 4 0.60None
Midgut0 00 of 4 0.10Down
Tubule6 10 of 4 0.50Down
Hindgut4 10 of 4 0.30Down
Heart2 00 of 4 0.20Down
Fat body13 74 of 4 1.15None
Ovary2 00 of 4 0.20Down
Testis3 10 of 4 0.30Down
Male accessory glands7 20 of 4 0.60None
Virgin spermatheca10 13 of 4 0.84None
Mated spermatheca12 53 of 4 1.02None
Adult carcass6 20 of 4 0.60None
Larval CNS46 64 of 4 3.86Up
Larval Salivary gland3 10 of 4 0.25Down
Larval midgut3 00 of 4 0.29Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut234 104 of 419.48Up
Larval fat body9 32 of 4 0.80None
Larval trachea16 44 of 4 1.35None
Larval carcass36 64 of 4 3.01Up
S2 cells (growing)0 00 of 4 0.07Down
Whole fly12 14 of 4

Looking for CG9015-RB. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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