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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9019-RA through 18771 annotations produced 1 hits

dissatisfaction (dsf):

Annotation Number : CG9019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015381
Gbrowse : chr2L:5925936-5938767 (+) // 100.0 //
Probeset : 1635606_at
Accessions : protein= NP_477140;, nucleotide= NM_057792;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007530 // sex determination // traceable author statement ///
Interpro : sex discrimination // traceable author statement"
FlyMine data for FBgn0015381.
Homophila reports that CG9019 is a close match (2e-11) to human gene AR;DHTR;KD;SBMA;SMAX1;TFM (NP_000035), a gene associated with Androgen insensitivity, 300068 (3);Breast cancer, male, with Reifenstein syndrome (3);Hypospadias, perineal, 300633 (3);Prostate cancer (3);Spinal and bulbar muscular atrophy of Kennedy, 313200 (3);{Prostate cancer, susceptibility to}, 176807 (3).
BioGrid reports that CG9019 interacts with CG9423 .
TRiP has 2 RNAi stocks for FBgn0015381 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015381 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head2 10 of 4 0.60None
Eye1 00 of 4 0.45None
Thoracicoabdominal ganglion2 10 of 4 0.60None
Salivary gland1 00 of 4 0.40None
Crop1 10 of 4 0.40None
Midgut1 00 of 4 0.40None
Tubule2 00 of 4 0.70Down
Hindgut0 00 of 4 0.10None
Heart1 00 of 4 0.38None
Fat body3 10 of 4 0.92None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.50None
Male accessory glands11 21 of 4 3.20Up
Virgin spermatheca3 00 of 4 0.85None
Mated spermatheca3 10 of 4 0.83None
Adult carcass3 10 of 4 0.80None
Larval CNS7 14 of 4 1.89None
Larval Salivary gland2 10 of 4 0.63None
Larval midgut0 00 of 4 0.21None
Larval tubule2 10 of 4 0.50None
Larval hindgut0 00 of 4 0.20None
Larval fat body1 00 of 4 0.30None
Larval trachea0 10 of 4 0.21None
Larval carcass2 00 of 4 0.55None
S2 cells (growing)1 00 of 4 0.38None
Whole fly3 10 of 4

Looking for CG9019-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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