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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9020-RA through 18771 annotations produced 1 hits



Arginyl-tRNA synthetase (Aats-arg):

Annotation Number : CG9020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027093
Gbrowse : chrX:15735795-15738169 (-) // 100.0 //
Probeset : 1627148_at
Accessions : protein= NP_573081;, nucleotide= NM_132853;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027093.
Homophila reports that CG9020 is a close match (5e-47) to human gene PCH6;RARS2;RARSL (NP_064716), a gene associated with Pontocerebellar hypoplasia, type 6, 611523 (3).
VDRC has 3 RNAi stocks for FBgn0027093 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 14 of 4 0.40Down
Head140 44 of 4 0.60Down
Eye101 04 of 4 0.41Down
Thoracicoabdominal ganglion103 14 of 4 0.40Down
Salivary gland309 114 of 4 1.25Up
Crop195 44 of 4 0.80None
Midgut228 94 of 4 0.90None
Tubule242 204 of 4 1.00None
Hindgut143 34 of 4 0.60Down
Heart128 24 of 4 0.52Down
Fat body218 194 of 4 0.89None
Ovary452 54 of 4 1.80Up
Testis76 54 of 4 0.30Down
Male accessory glands199 54 of 4 0.80None
Virgin spermatheca195 84 of 4 0.79None
Mated spermatheca266 144 of 4 1.08None
Adult carcass143 94 of 4 0.60Down
Larval CNS352 214 of 4 1.43Up
Larval Salivary gland711 584 of 4 2.88Up
Larval midgut213 104 of 4 0.86None
Larval tubule183 24 of 4 0.70None
Larval hindgut226 114 of 4 0.92None
Larval fat body241 104 of 4 1.00None
Larval trachea281 384 of 4 1.14None
Larval carcass339 284 of 4 1.38Up
S2 cells (growing)432 114 of 4 1.75Up
Whole fly247 204 of 4

Looking for CG9020-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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