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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9021-RA through 18771 annotations produced 1 hits



(CG9021):

Annotation Number : CG9021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031747
Gbrowse : chr2L:5903358-5904674 (-) // 100.0 //
Probeset : 1641070_at
Accessions : protein= NP_608967;, nucleotide= NM_135123;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031747.
BDGP gene expression has embryonic in situ data for CG9021: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head9 ± 00 of 4 1.20None
Eye3 ± 10 of 4 0.41None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland11 ± 40 of 4 1.45None
Crop7 ± 10 of 4 1.00None
Midgut34 ± 33 of 4 4.50Up
Tubule13 ± 00 of 4 1.70Up
Hindgut49 ± 321 of 4 6.40None
Heart5 ± 00 of 4 0.75None
Fat body3 ± 30 of 4 0.50None
Ovary1 ± 00 of 4 0.20Down
Testis12 ± 00 of 4 1.70Up
Male accessory glands18 ± 31 of 4 2.40Up
Virgin spermatheca8 ± 10 of 4 1.07None
Mated spermatheca5 ± 20 of 4 0.71None
Adult carcass7 ± 20 of 4 0.90None
Larval CNS5 ± 00 of 4 0.73None
Larval Salivary gland1 ± 00 of 4 0.16Down
Larval midgut499 ± 604 of 465.28Up
Larval tubule73 ± 314 of 4 9.60None
Larval hindgut4174 ± 1034 of 4545.65Up
Larval fat body65 ± 513 of 4 8.60None
Larval trachea1 ± 10 of 4 0.23Down
Larval carcass21 ± 52 of 4 2.84None
S2 cells (growing)12 ± 01 of 4 1.59None
Whole fly7 ± 10 of 4

Looking for CG9021-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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