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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9022-RA through 18771 annotations produced 1 hits



Oligosaccharyltransferase 48kD subunit (Ost48):

Annotation Number : CG9022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014868
Gbrowse : chrX:9050954-9052544 (-) // 100.0 //
Probeset : 1625055_at
Accessions : protein= NP_511096;, nucleotide= NM_078541;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from sequence or structural s
FlyMine data for FBgn0014868.
BDGP gene expression has embryonic in situ data for Ost48: 16 pix of staining in 23 body parts.
TRiP has 1 RNAi stocks for FBgn0014868 available for purchase.
VDRC has 6 RNAi stocks for FBgn0014868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 104 of 4 0.70Down
Head291 294 of 4 0.80None
Eye192 04 of 4 0.50Down
Thoracicoabdominal ganglion287 114 of 4 0.80None
Salivary gland1858 524 of 4 4.86Up
Crop248 124 of 4 0.60Down
Midgut692 144 of 4 1.80Up
Tubule370 434 of 4 1.00None
Hindgut343 54 of 4 0.90None
Heart326 74 of 4 0.85None
Fat body388 504 of 4 1.01None
Ovary392 154 of 4 1.00None
Testis197 24 of 4 0.50Down
Male accessory glands2155 454 of 4 5.60Up
Virgin spermatheca1230 534 of 4 3.22Up
Mated spermatheca1222 764 of 4 3.20Up
Adult carcass333 274 of 4 0.90None
Larval CNS749 594 of 4 1.96Up
Larval Salivary gland2819 194 of 4 7.37Up
Larval midgut565 264 of 4 1.48Up
Larval tubule459 184 of 4 1.20None
Larval hindgut461 104 of 4 1.21None
Larval fat body403 444 of 4 1.10None
Larval trachea778 1074 of 4 2.03Up
Larval carcass755 454 of 4 1.97Up
S2 cells (growing)972 34 of 4 2.54Up
Whole fly382 384 of 4

Looking for CG9022-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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